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Block 1 - COOI: Recovering a microbial community
COO-I-1. Sequencing
COO-I-2. Data processing
COO-I-3. Metagenome assembly
COO-I-4. Binning
Block 1 - COOII: Reconstructing evolutionary history
COO-II-1. Genome annotation
COO-II-2. 16S rRNA phylogenetics
COO-II-3. Phylogenomic reconstruction
Block 1 - COOIII: A hot take on evolution
COO-III-1. Growth parameter prediction
COO-III-2. Genome architectural features related to niche adaptation
COO-III-3. Gene content associated with niche adaptation
COO-III-4. Genome composition and optimal growth temperature
Block 2 - COOI: Gene tree intepretation & orthology of an important metabolic enzyme
Block 2 - COOI Manually interpreting a more complicated gene tree
Block 2 -Using NOTUNG for tree reconciliation
Block 2 - COOI putting it all together on the species tree
Block 2 - COOII: Making our own orthologs between animals and plotting their conservation
Block 2 - COOII: Making our own orthologs between animals and plotting their conservation: code answers
Block 2 - COOIII: Horizontal gene transfer in a gene tree of an aminoacyl-tRNA synthetase
Block 2 - COOIII: Profile searches
Block 2 - COOIII: size of a gene family
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Genome Bioinformatics - Computer practicals